Original Article

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Structure and functional interactions of INO80 actin/Arp module
Xuan Zhang 1, Xuejuan Wang 1,* , Zhihui Zhang1, and Gang Cai 1,2,*
1 Hefei National Laboratory for Physical Sciences at Microscale and School of Life Sciences, University of Science & Technology of China, Hefei 230026, China
2 CAS Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, Hefei 230026, China
*Correspondence to:Xuejuan Wang, E-mail: xuejuan@ustc.edu.cn; Gang Cai, E-mail: gcai@ustc.edu.cn
J Mol Cell Biol, Volume 11, Issue 5, May 2019, 345-355,  https://doi.org/10.1093/jmcb/mjy062
Keyword: INO80, nuclear actin/Arp module, modular architecture, actin/Arp–Nuc207 assembly
The presence and functions of nuclear actin have been controversial due to the lack of molecular mechanisms. Nuclear actin and actin-related proteins (Arps) are subunits of several chromatin remodelers, including the evolutionarily conserved INO80 chromatin-remodeling complex. Here, we present an improved cryo-EM structure of the yeast INO80 complex and the first 3D reconstruction of the INO80 actin/Arp module. The modular and subunit architecture is defined using a combination of subunit deletion analysis and published crosslinking-mass spectrometry. The functional interactions of the INO80 actin/Arp module with a nucleosome is 3D EM reconstructed in two different binding states. Nucleosomes initially bind to the Arp8 subunit and the substantial conformational changes maximize nucleosome contacts of the actin/Arp module, which could promote the bound nucleosome to be engaged onto the INO80 ATPase domain. Our findings suggest that the conserved nuclear actin/Arp module acts a conformational switch of the INO80 for nucleosome binding.